PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0073s0126.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 343aa    MW: 38083.4 Da    PI: 7.0475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0073s0126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-19126176256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Kaladp0073s0126.1.p 126 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEDAAMAYDRQAFKLRGE 176
                          59******9.**********966...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.78E-33125184No hitNo description
SMARTSM003801.5E-38126189IPR001471AP2/ERF domain
PROSITE profilePS5103222.879126183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-32126184IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23126184IPR016177DNA-binding domain
PfamPF008472.5E-12127176IPR001471AP2/ERF domain
PRINTSPR003675.0E-11127138IPR001471AP2/ERF domain
PRINTSPR003675.0E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MATSSDQNDM DRYGRSPDRQ NPYQFHQGQQ IPLHPSSSAS RSVFPFALDA SQLQFRQQQQ  60
QHCSIAYYPP QTLQQQQQQL LNGDLATMGA ALTPRHHQML MMMNRVGVQQ KTSSLLRPQP  120
INTTKLYRGV RQRHWGKWVA EIRLPRDRTR LWLGTFDTAE DAAMAYDRQA FKLRGENARL  180
NFPERFLNKE ALISTAPTSP SSTPAGSNPA PNSSHKLEEP CKEEEEPNLS QVANNATGVN  240
TNECVADKNE FVLGDIAEAW FNTIPAGWCP GSPISDNLEA TNHLLLLPNP LPSSAFGQHN  300
EIAELSTACE LRRQLNNLGA AASTSSSSSN SCSFLWKDPH ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21125185162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043551.18e-71AP2/ERF domain-containing transcription factor, putative
TrEMBLA0A061E4178e-71A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGPOPTR_0019s13330.13e-62(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-45ERF family protein